PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011077331.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family TCP
Protein Properties Length: 215aa    MW: 22884.9 Da    PI: 8.9209
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011077331.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.46.2e-3558149690
             TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.....eaesssssasnsssg.. 88 
                     ++ +++h+kv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt     +++s+s+c     ++++          +  
  XP_011077331.1  58 SSRKDRHSKVNGRGRRIRIPALCAARVFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTgtvpaQAISSSSCavplsNPSA----------Tvq 142
                     6789********************************************************4444433333555433322222..........111 PP

             TCP  89 .....ka 90 
                          ++
  XP_011077331.1 143 spmtlSS 149
                     2222322 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.3E-3159132IPR005333Transcription factor, TCP
PROSITE profilePS5136927.62160114IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSSSAMVLNE ISDNPLSLPP NLRHLALPPT APHPFTNASA ATQNLTPRVG SRKPAGGSSR  60
KDRHSKVNGR GRRIRIPALC AARVFQLTRE LGHRSDGETI EWLLRQAEPS IIAATGTGTV  120
PAQAISSSSC AVPLSNPSAT VQSPMTLSSP SSNIMLTAGP PPEPNCRPNL RQQEASTLEF  180
PMSGYRHMPF MALLLQPAMV EDEVDSYSGV GGDNQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077331.11e-156PREDICTED: transcription factor TCP11
SwissprotQ9SJK79e-37TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A022R1J81e-63A0A022R1J8_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000555416e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.15e-38TCP family protein